489.Khvorova A., Lescoute A., Westhof E., Jayasena S.D. // Nat. Struct. Biol. 2003. V.10. P.708–712.
490.Kiga D., Futamura Y., Sakamoto K., Yokoyama S. An RNA aptamer to the xanthine/guanine base with a distinctive mode of purine recognition // Nucleic Acids Res. 1998. V.26. P.1755–1760.
491.Kikuchi K., Umehara T., Fukuda K., Hwang J., Kuno A., Hasegawa T., Nishikawa S. RNA aptamers targeted to domain II of hepatitis C virus IRES that bind to its apical loop region // J. Biochem. 2003. V.133. P.263–270.
492.Kikuchi K., Umehara T., Fukuda K., Kuno A., Hasegawa T., Nishikawa S. A hepatitis C virus (HCV) internal ribosome entry site (IRES) domain III-IV-targeted aptamer inhibits translation by binding to an apical loop of domain IIId // Nucleic Acids Res. 2005. V.33. P.683-692.
493.Kim Y., Cao Z., Tan W. Molecular assembly for high-performance bivalent nucleic acid inhibitor // PNAS. 2008. V.105. P. 5664-5669.
494.Kim Y.M., Choi K.H., Jang Y.J., Yu J., Jeong S. Specific modulation of the antiDNA autoantibody-nucleic acids interaction by the high affinity RNA aptamer // Biochem. Biophys. Res. Commun. 2003. V.300. P.516-523.
495.Kim N., Gan H.H., Schlick T. A computational proposal for designing structured RNA pools for in vitro selection of RNAs // RNA. 2007. V.13. P.478-492.
496.Kim D.S., Gusti V., Pillai S.G., Gaur R.K. An artificial riboswitch for controlling pre-mRNA splicing // RNA. 2005. V.11. P.1667–1677.
497.Kim M.Y., Jeong S. Inhibition of the functions of the nucleocapsid protein of human immunodeficiency virus-1 by an RNA aptamer // Biochem. Biophys. Res. Commun. 2004. V.320. P.1181-1186.
498.Kim S.J., Kim M.Y., Lee J.H., You J.C., Jeong S. Selection and stabilization of the RNA aptamers against the human immunodeficiency virus type-1 nucleocapsid protein // Biochem. Biophys. Res. Commun. 2002. V.291. P.925–931.
499.Kim J.S., Park S.J., Kwak K.J., Kim Y.O., Kim J.Y., Song J., Jang B., Jung C.-H., Kang H. Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli // Nucleic Acids Res. 2007. V.35. P.506-516.
116
500. Kim J.N., Roth A., Breaker R.R. Guanine riboswitch variants from Mesoplasma florum selectively recognize 2‘-deoxyguanosine // PNAS. 2007. V.104. P.16092– 16097.
501.Kim E.S., Serur A., Huang J., Manley C.A., McCrudden K.W., Frischer J.S., Soffer S.Z., Ring L., New T., Zabski S., Rudge J.S., Holash J., Yancopoulos G.D., Kandel J.J., Yamashiro D.J. Potent VEGF blockade causes regression of coopted vessels in a model of neuroblastoma // Proc. Natl. Acad. Sci. USA. 2002. V.99. P.11399-11404.
502.Kimata Y., Iwaki M., Lim C.R., Kohno K. A novel mutation which enhances the fluorescence of green fluorescent protein at high temperatures // Biochem. Biophys. Res. Commun. 1997. V.232. P.69-73.
503.Kim-Ha J., Kerr K., MacDonald P.M. Translational regulation of oskar mRNA by bruno, an ovarian RNA-binding protein, is essential // Cell. 1995. V.81. P.403–412.
504.Kimoto M., Shirouzu M., Mizutani S., Koide H., Kaziro Y., Hirao I., Yokoyama S. Anti-(Raf-1) RNA aptamers that inhibit Ras-induced Raf-1 activation // Eur. J. Biochem. 2002. V.269. P.697-704.
505.Kitamura A., Muto Y., Watanabe S., Kim I., Ito T., Nishiya Y., Sakamoto K., Ohtsuki T., Kawai G., Watanabe K., et al. Solution structure of an RNA fragment with the P7/P9.0 region and the 3%-terminal guanosine of the tetrahymena group I intron // RNA. 2002. V.8. P.440–451.
506.Kleinjung F., Klussmann S., Erdmann V.A., Scheller F.W., Furste J.P., Bier F.F. High-affinity RNA as a recognition element in a biosensor // Anal. Chem. 1998. V.70. P.328–331.
507.Klug S.J., Huttenhofer A., Famulok M. In vitro selection of RNA aptamers that bind special elongation factor SelB, a protein with multiple RNA-binding sites, reveals one major interaction domain at the carboxyl terminus // RNA. 1999. V.5. P.1180-1190.
508.Klug S.J., Huttenhofer A., Kromayer M., Famulok M. In vitro and in vivo characterization of novel mRNA motifs that bind special elongation factor SelB // Proc. Natl. Acad. Sci. USA. 1997. V.94. P.6676-6681.
117
509.Klussmann S., Nolte A., Bald R., Erdmann V.A., Fuerste J.P. Mirror-image RNA that binds D-adenosine // Nat. Biotechnol. 1996. V.14. P.1112–1115.
510.Kneller D.G., Kuntz I.D. UCSF Sparky: An NMR display, annotation and assignment tool // J. Cell. Biochem. 1993. V.53. P.254.
511.Knight R., Birmingham A., Yarus M. BayesFold: Rational 2° folds that combine
thermodynamic, covariation, and chemical data for aligned RNA sequences // RNA.
2004. V.10. P.1323–1336.
512.Knight R., De Sterck H., Markel R., Smit S., Oshmyansky A., Yarus M. Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids // Nucleic Acids Res. 2005. V.33. P.5924-5935.
513.Knight R., Yarus M. Analyzing partially randomized nucleic acid pools: straight dope on doping // Nucleic Acids Res. 2003. V.31. P.e30.
514.Knight R., Yarus M. Finding specific RNA motifs: function in a zeptomole world?
//RNA. 2003. V.9. P.218-230.
515.Knosp W.M., Saneyoshi C., Shou S., Bachinger H.P., Stadler H.S. Elucidation, Quantitative Refinement, and in Vivo Utilization of the HOXA13 DNA Binding Site
//J. Biol. Chem. 2007. V.282. P.6843-6853.
516.Knudsen S.M., Ellington A.D. // Klussmann S., Ed. The Aptamer Handbook. Wiley-VCH, Weinheim, 2006. P.290–310.
517.Kobasa D., Takada A., Shinya K., et al. Enhanced virulence of influenza A viruses with the haemagglutinin of the 1918 pandemic virus // Nature. 2004. V.431. P.703–
707.
518.Kobelt P., Helmling S., Stengel A., Wlotzka B., Andresen V., Klapp B.F., Wiedenmann B., Klussmann S., Monnikes H. Anti-ghrelin Spiegelmer NOX-B11 inhibits neurostimulatory and orexigenic effects of peripheral ghrelin in rats // Gut. 2006. V.55. P.788-792.
519.Koizumi M., Breaker R.R. Molecular recognition of cAMP by an RNA aptamer // Biochemistry. 2000. V.39. P.8983–8992.
520.Koizumi M., Soukup G.A., Kerr J.N., Breaker R.R. Allosteric selection of ribozymes that respond to the second messengers cGMP and cAMP // Nature Struct. Biol. 1999. V.6. P.1062–1071.
118
521.Komatsu Y., Yamashita S., Kazama N., Nobuoka K., Ohtsuka E. Construction of new ribozymes requiring short regulator oligonucleotides as a cofactor // J. Mol. Biol. 2000. V.299. P.1231-1243.
522.Konig J., Julius C., Baumann S., Homann M., Goringer H.U., Feldbrugge M. Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers // RNA. 2007. V.13. P.614-622.
523.Kore A.R., Vaish N.K., Morris J.A., Eckstein F. In vitro evolution of the hammerhead ribozyme to a purine-specific ribozyme using mutagenic PCR with two nucleotide analogues // J. Mol. Biol. 2000. V.301. P.1113-1121.
524.Korth C., Stierli B., Streit P., Moser M., Schaller O., Fischer R., Schulz-Schaeffer W., Kretzschmar H., Raeber A., Braun U., Ehrensperger F., Hornemann S., Glockshuber R., Riek R., Billeter M., Wuthrich K., Oesch B. Prion (PrPSc)-specific epitope defined by a monoclonal antibody // Nature. 1997. V.390. P.74–77.
525.Koshkin A.A., Nielsen P., Meldgaard M., Rajwanshi V.K., Singh S.K., Wengel J. LNA (Locked Nucleic Acid): an RNA mimic forming exceedingly stable LNA:LNA duplexes // J. Am. Chem. Soc. 1998. V.120. P.13252–13253.
526.Koshkin A.A., Rajwanshi V.K., Wengel J. Novel convenient synthesis of LNA [2.2.1] bicyclo nucleosides // Tetrahedron Lett. 1998. V.39. P.4381–4384.
527.Koshkin A.A., Singh S.K., Nielsen P., Rajwanshi V.K., Kumar R., Meldgaard M., Olsen C.E., Wengel J. LNA (Locked Nucleic Acids) synthesis of the Adenine, Cytosine, Guanine, 5-Methylcytosine, Thymine and Uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition // Tetrahedron. 1998. V.54. P.3607–3630.
528.Kovbasyuk L., Krämer R. Allosteric supramolecular receptors and catalysts // Chem. Rev. 2004. V.104. P.3161–3187.
529.Krylov S.N. Nonequilibrium Capillary Electrophoresis of Equilibrium Mixtures (NECEEM): A Novel Method for Biomolecular Screening // J. Biomol. Screen. 2006. V.11. P.115-122.
530.Kubik M.F., Bell C., Fitzwater T., Watson S.R., Tasset D.M. Isolation and characterization of 2'-fluoro-, 2'-amino-, and 2'-fluoro-/amino-modified RNA ligands
119
to human IFN-gamma that inhibit receptor binding // J. Immunol. 1997. V.159. P.259-
267.
531.Kubodera T., Watanabe M., Yoshiuchi K., Yamashita N., Nishimura A., Nakai S., Gomi K., Hanamoto H. Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the introns containing a riboswitch-like domain in the 5'-UTR // FEBS Lett. 2003. V.555. P.516–520.
532.Kühnast B., Dollé F., Terrazzino S., Rousseau B., Loch C., Vaufrey F., Hinnen F., Doignon I., Pillon F., David C., Crouzel C., Tavitian B. General method to label antisense oligonucleotides with radioactive halogens for pharmacological and imaging studies // Bioconjug. Chem. 2000. V.11. P.627–636.
533.Kulkarni O., Pawar R.D., Purschke W., Eulberg D., Selve N., Buchner K., Ninichuk V., Segerer S., Vielhauer V., Klussmann S., et al. Spiegelmer Inhibition of CCL2/MCP-1 Ameliorates Lupus Nephritis in MRL-(Fas)lpr Mice // J. Am. Soc. Nephrol. 2007. V.18. P.2350-2358.
534.Kumar P.K.R., Machida K., Urvil P.T., Kakiuchi N., Vishnuvardhan D., Shimotohno K., Taira K., Nishikawa S. Isolation of RNA aptamers specific to the NS3 protein of hepatitis C virus from a pool of completely random RNA // Virology. 1997. V.237. P.270–282.
535.Kumar R., Singh S.K., Koshkin A.A., Rajwanshi V.K., Meldgaard M., Wengel J. The first analogues of LNA (locked nucleic acids): phosphorothioate-LNA and 2'-thio- LNA // Bioorg. Med. Chem. Lett. 1998. V.8. P.2219–2222.
536.Kumar P.K.R., Suh Y.A., Taira K., Nishikawa S. Point and compensation mutations to evaluate essential stem structures of genomic HDV ribozyme // FASEB J. 1993. V.7. P.124–129.
537.Kumar R.K., Yarus M. RNA-catalyzed amino acid activation // Biochemistry. 2001. V.40. P.6998-7004.
538.Kumarevel T.S., Gopinath S.C.B., Nishikawa S., Mizuno H., Kumar P.K.R. Identification of important chemical groups of the hut mRNA for HutP interactions that regulate the hut operon in Bacillus subtilis // Nucleic Acids Res. 2004. V.32. P.3904–3912.
120