Материал: ДНК наномеханические роботы и вычислительные устройства (Попов), 2008, c.210

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658.Nguyen D.H., DeFina S.C., Fink W.H., Dieckmann T. Binding to an RNA aptamer changes the charge distribution and conformation of malachite green // J. Am. Chem. Soc. 2002. V.124. P.15081-15084.

659.Nickens D.G., Patterson J.T., Burke D.H. Inhibition of HIV-1 reverse transcriptase by RNA aptamers in Escherichia coli // RNA. 2003. V.9. P.1029–1033.

660.Nielsen P.E. // J. Mol. Recog. 1990. V.3. P.1–25.

661.Nieuwlandt D., Wecker M., Gold L. In vitro selection of RNA ligands to substance P // Biochemistry. 1995. V.34. P.5651-5659.

662.Nieuwlandt D., West M., Cheng X., Kirshenheuter G., Eaton B.E. The First Example of an RNA Urea Synthase: Selection through the Enzyme Active Site of Human Neutrophile Elastase // ChemBioChem. 2003. V.4. P.651-654.

663.Nikonowicz E., Sirr A., Legault P., Jucker F., Baer L., Pardi A. Preparation of 13C and 15N labeled RNAs for heteronuclear multi-dimensional NMR studies // Nucleic Acids Res. 1992. V.20. P.4507– 4513.

664.Nimjee S.M., Rusconi C.P., Sullenger B.A. Aptamers: an emerging class of therapeutics // Annu. Rev. Med. 2005. V.56. P.555-583.

665.Ninichuk V., Clauss S., Kulkarni O., Schmid H., Segerer S., Radomska E., Eulberg D., Buchner K., Selve N., Klussmann S., et al. Late Onset of Ccl2 Blockade with the Spiegelmer mNOX-E36-3'PEG Prevents Glomerulosclerosis and Improves Glomerular Filtration Rate in db/db Mice // Am. J. Pathol. 2008. V.172. P.628-637.

666.Nishikawa F., Funaji K., Fukuda K., Nishikawa S. In vitro selection of RNA aptamers against the HCV NS3 helicase domain // Oligonucleotides. 2004. V.14. P.114–129.

667.Nishikawa F., Kakiuchi N., Funaji K., Fukuda K., Sekiya S., Nishikawa S. Inhibition of HCV NS3 protease by RNA aptamers in cells // Nucleic Acids Res. 2003. V.31. P.1935–1943.

668.Nix J., Sussman D., Wilson C. The 1.3 Å crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition // J. Mol. Biol. 2000. V.296. P.1235-1244.

131

669.Noeske J., Buck J., Furtig B., Nasiri H.R., Schwalbe H., Wohnert J. Interplay of 'induced fit' and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch // Nucleic Acids Res. 2007. V.35. P.572-583.

670.Nolte A., Klussmann S., Bald R., Erdmann V.A., Furste J.P. Mirror-design of L- oligonucleotide ligands binding to L-arginine // Nat Biotechnol. 1996. V.14. P.1116–

1119.

671.Nonin S., Jiang F., Patel D.J. Imino proton exchange and base-pair kinetics in the AMP-RNA aptamer complex // J. Mol. Biol. 1997. V.268. P.359-374.

672.Nonin-Lecomte S., Lin C.H., Patel D.J. Additional hydrogen bonds and base-pair kinetics in the symmetrical AMP-DNA aptamer complex // Biophys. J. 2001. V.81. P.3422-3431.

673.Nowakowski J., Shim P.J., Prasad G.S., Stout C.D., Joyce G.F. Crystal structure of an 82-nucleotide RNA-DNA complex formed by the 10-23 DNA enzyme // Nat. Struct. Biol. 1999. V.6. P.151-156.

674.Noyes M.B., Meng X., Wakabayashi A., Sinha S., Brodsky M.H., Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system // Nucleic Acids Res. 2008. V.36. P.2547-2560.

675.Nudler E., Mironov A.S. The riboswitch control of bacterial metabolism // Trends Biochem. Sci. 2004. V.29. P.11–17.

676.Nutiu R., Li Y. Structure-switching signaling aptamers // J. Am. Chem. Soc. 2003. V.125. P.4771–4778.

677.Nutiu R., Li Y.F. In vitro selection of structure-switching signaling aptamers // Angew. Chem. Int. Ed. Engl. 2005. V.44. P.1061–1065.

678.Nutiu R., Mei S., Liu Z.J., Li Y.F. Engineering DNA aptamers and DNA enzymes with fluorescence-signaling properties // Pure Appl. Chem. 2004. V.76. P.1547–1561.

679.O'Connell D., Koenig A., Jennings S., Hicke B., Han H.L., Fitzwater T., Chang Y.F., Varki N., Parma D., Varki A. Calcium-dependent oligonucleotide antagonists specific for L-selectin // Proc. Natl. Acad. Sci. USA. 1996. V.93. P.5883-5887.

680.Ohuchi S.P., Ohtsu T., Nakamura Y. Selection of RNA aptamers against recombinant transforming growth factor-β type III receptor displayed on cell surface // Biochimie. 2006. V.88. P.897-904.

132

681.Ordoukhanian P., Joyce G.F. A molecular description of the evolution of resistance // Chem. Biol. 1999. V.6. P.881-889.

682.Osborne S.E., Ellington A.D. Nucleic Acid Selection and the Challenge of Combinatorial Chemistry // Chem. Rev. 1997. V.97. P.349-370.

683.Osborne S.E., Matsumura I., Ellington A.D. Aptamers as therapeutic and diagnostic reagents: problems and prospects // Curr. Opin. Chem. Biol. 1997. V.1. P.5–9.

684.O'Sullivan C.K. Aptasensors--the future of biosensing? // Anal. Bioanal. Chem. 2002. V.372. P.44–48.

685.Ottink O.M., Rampersad S.M., Tessari M., Zaman G.J.R., Heus H.A., Wijmenga S.S. Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined–induced fit mechanism // RNA. 2007. V.13. P.2202-2212.

686.Padmanabhan K., Padmanabhan K.P., Ferrara J.D., Sadler J.E., Tulinsky A. The structure of α-thrombin inhibited by a 15-mer single-stranded DNA aptamer // J. Biol. Chem. 1993. V.268. P.17651-17654.

687.Padmanabhan K., Tulinsky A. An ambiguous structure of a DNA 15-mer thrombin complex // Acta Crystallogr. D. 1996. V.52. P.272-282.

688.Pagratis N.C., Bell C., Chang Y.F., Jennings S., Fitzwater T., Jellinek D., Dang C. Potent 2'-amino-, and 2'-fluoro-2'-deoxyribonucleotide RNA inhibitors of keratinocyte growth factor // Nat. Biotechnol. 1997. V.15. P.68-73.

689.Pakleza C., Cognet J.A.H. Biopolymer Chain Elasticity: a novel concept and a least deformation energy principle predicts backbone and overall folding of DNA TTT hairpins in agreement with NMR distances // Nucleic Acids Res. 2003. V.31. P.10751085.

690.Pan J., Thirumalai D., Woodson S.A. Magnesium-dependent folding of selfsplicing RNA: exploring the link between cooperativity, thermodynamics and kinetics // Proc. Natl Acad. Sci. USA. 1999. V.96. P.6149–6154.

691.16. T. Pan, Curr. Opin. Chem. Biol. 1, 17 (1997).

692.Pan T., Uhlenbeck O.C. A small metalloribozyme with a two-step mechanism // Nature. 1992. V.358. P.560-563.

133

693.Pan T., Uhlenbeck O.C. In vitro selection of RNAs that undergo autolytic cleavage with Pb2+ // Biochemistry. 1992. V.31. P.3887-3895.

694.Pan Q., Zhang X.-L., Wu H.-Y., He P.-W., Wang F., Zhang M.-S., Hu J.-M., Xia B., Wu J. Aptamers That Preferentially Bind Type IVB Pili and Inhibit Human Monocytic-Cell Invasion by Salmonella enterica Serovar Typhi // Antimicrob. Agents Chemother. 2005. V.49. P.4052-4060.

695.Pan W., Craven R.C., Qiu Q., Wilson C.B., Wills J.W., Golovine S., Wang J.F. Isolation of virus-neutralizing RNAs from a large pool of random sequences // Proc. Natl. Acad. Sci. USA. 1995. V.92. P.11509-11513.

696.Patel D.J. // Curr. Opin. Struct. Biol. 1999. V.9. P.74.

697.Patel D.J., Suri A.K. Structure, recognition and discrimination in RNA aptamer complexes with cofactors, amino acids, drugs and aminoglycoside antibiotics // J. Biotechnol. 2000. V.74. P.39–60.

698.Patel D.J., Suri A.K., Jiang F., Jiang L., Fan P., Kumar R.A., Nonin S. Structure, recognition and adaptive binding in RNA aptamer complexes // J. Mol. Biol. 1997. V.272. P.645–664.

699.Paul N., Springsteen G., Joyce G.F. Conversion of a ribozyme to a deoxyribozyme through in vitro evolution // Chem. Biol. 2006. V.13. P.329-338.

700.Pearson N.D., Prescott C.D. RNA as a drug target // Chem. Biol. 1997. V.4. P.409–414.

701.Peeters E., Wartel C., Maes D., Charlier D. Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing // Nucleic Acids Res. 2007. V.35. P.623-633

702.Pei D.H., Ulrich H.D., Schultz P.G. A combinatorial approach toward DNA recognition // Science. 1991. V.253. P.1408-1411.

703.Penchovsky R., Breaker R.R. Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes // Nat. Biotechnol. 2005. V.23. P.1424-1433.

704.Peng C.G., Damha M.J. G-quadruplex induced stabilization by 2'-deoxy-2'-fluoro- D-arabinonucleic acids (2'F-ANA) // Nucleic Acids Res. 2007. V.35. P.4977-4988.

134

705.Peracchi A., Beigelman L., Usman N., Herschlag D. Rescue of abasic hammerhead ribozymes by exogenous addition of specific bases // Proc. Natl Acad. Sci. USA. 1996. V.93. P.11522–11527.

706.Perrin D.M., Garestier T., Helene C. Bridging the Gap between Proteins and Nucleic Acids: A Metal-Independent RNAseA Mimic with Two Protein-Like Functionalities // J. Am. Chem. Soc. 2001. V.123. P.1556-1563.

707.Pestourie C., Tavitian B., Duconge F. Aptamers against extracellular targets for in vivo applications // Biochimie. 2005. V.87. P.921-930.

708.Petersen M., Wengel J. LNA: a versatile tool for therapeutics and genomics // Trends Biotechnol. 2003. V.21. P.74–81.

709.Pieken W.A., Olsen D.B., Benseler F., Aurup H., Eckstein F. Kinetic characterization of ribonuclease-resistant 2'-modified hammerhead ribozymes // Science. 1991. V.253. P.314–317.

710.Piganeau N., Jenne A., Thuillier V., Famulok M. An Allosteric Ribozyme Regulated by Doxycycline // Angew. Chem. Int. Ed. 2000. V.39. P.4369-4373.

711.Piganeau N., Schroeder R. Aptamer structures. A preview into regulatory pathways? // Chem. Biol. 2003. V.10. P.103–104.

712.Piganeau N., Thuillier V., Famulok M. In vitro selection of allosteric ribozymes: theory and experimental validation // J. Mol. Biol. 2001. V.312. P.1177-1190.

713.Pileur F., Andreola M.L., Dausse E., Michel J., Moreau S., Yamada H., Gaidamakov S.A., Crouch R.J., Toulme J.J., Cazenave C. Selective inhibitory DNA aptamers of the human RNase H1 // Nucleic Acids Res. 2003. V.31. P.5776-5788.

714.Plummer K.A., Carothers J.M., Yoshimura M., Szostak J.W., Verdine G.L. In vitro selection of RNA aptamers against a composite small molecule-protein surface // Nucleic Acids Res. 2005. V.33. P.5602-5610.

715.Ponthier J.L., Schluepen C., Chen W., Lersch R.A., Gee S.L., Hou V.C., Lo A.J., Short S.A., Chasis J.A., Winkelmann J.C., et al. Fox-2 Splicing Factor Binds to a Conserved Intron Motif to Promote Inclusion of Protein 4.1R Alternative Exon 16 // J. Biol. Chem. 2006. V.281. P.12468-12474.

716.Porta H., Lizardi P.M. An allosteric hammerhead ribozyme // Biotechnology. 1995. V.13. P.161–164.

135

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