776.Schultze P., Macaya R.F., Feigon J. Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG) // J. Mol. Biol. 1994. V.235. P.1532-1547.
777.Schwalbe H, Buck J, Furtig B, Noeske J, Wohnert J. Structures of RNA switches: insight into molecular recognition and tertiary structure // Angew. Chem. Int. Ed. Engl. 2007. V.46. P.1212–1219.
778.Sclavi B., Sullivan M., Chance M.R., Brenowitz M., Woodson S.A. RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting // Science. 1998. V.279. P.1940–1943.
779.Scott W.G., Finch J.T., Klug A. The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage // Cell. 1995. V.81. P.991–1002.
780.Seelig B., Jäschke A. A small catalytic RNA motif with Diels-Alderase activity // Chem. Biol. 1999. V.6. P.167-176.
781.Seelig B., Keiper S., Stuhlmann F., Jäschke A. Enantioselective Ribozyme
Catalysis of a Bimolecular Cycloaddition Reaction // Angew. Chem. Int. Ed. 2000.
V.39. P.4576-4579.
782.Seetharaman S., Zivarts M., Sudarsan N., Breaker R.R. Immobilized RNA switches for the analysis of complex chemical and biological mixtures // Nat. Biotechnol. 2001. V.19. P.336–341.
783.Seiwert, S.D., Nahreini, T.S., Aigner, S., Ahn, N.G., and Uhlenbeck, O.C. (2000) RNA aptamers as pathway-specific MAP kinase inhibitors. Chem. Biol. 7, 833–843
784.Sekiya S., Noda K., Nishikawa F., Yokoyama T., Kumar P.K.R., Nishikawa S. Characterization and Application of a Novel RNA Aptamer against the Mouse Prion Protein // Journal of Biochemistry. 2006. V.139. P.383-390.
785.Sekkai D., Dausse E., Di Primo C., Darfeuille F., Boiziau C., Toulme J.J. In vitro selection of DNA aptamers against the HIV-1 TAR RNA hairpin // Antisense Nucleic Acid Drug Dev. 2002. V.12. P.265-274.
786.Sengle G., Eisenführ A., Arora P.S., Nowick J.S., Famulok M. Novel RNA
catalysts for the Michael reaction // Chem. Biol. 2001. V.8. P.459-473.
141
787.SenGupta D.J., Zhang B., Kraemer B., Pochart P., Fields S., Wickens M. A threehybrid system to detect RNA–protein interactions in vivo // Proc. Natl. Acad. Sci. 1996. V.93. P.8496–8501.
788.SenGupta D.J., Wickens M., Fields S. Identification of RNAs that bind to a specific protein using the yeast three-hybrid system // RNA. 1999. V.5. P.596–601.
789.Septak M. Kinetic studies on depurination and detritylation of CPG-bound intermediates during oligonucleotide synthesis // Nucleic Acids Res. 1996. V.24. P.3053–3058.
790.Serganov A., Keiper S., Malinina L., Tereshko V., Skripkin E., Höbartner C.,
Polonskaia A., Phan A.T., Wombacher R., Micura R., Dauter Z., Jäschke A., Patel
D.J. Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bond formation // Nat. Struct. Mol. Biol. 2005. V.12. P.218-224.
791.Serganov A., Polonskaia A., Phan A.T., Breaker R.R., Patel D.J. Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch // Nature. 2006. V.441. P.1167–1171.
792.Serganov A., Yuan Y.R., Pikovskaya O., Polonskaia A., Malinina L., Phan A.T., Hobartner C., Micura R., Breaker R.R., et al. Structural basis for discriminative regulation of gene expression by adenineand guanine-sensing mRNAs // Chem. Biol. 2004. V.11. P.1729–1741.
793.Sevilimedu A., Shi H., Lis J.T. TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages // Nucleic Acids Res. 2008. V.36. P.3118-3127.
794.Shah S., Rangarajan S., Friedman S.H. Light-activated RNA interference // Angew. Chem. Int. Ed. Engl. 2005. V.44. P.1328–1332.
795.Shangguan D., Cao Z.C., Li Y., Tan W. Aptamers Evolved from Cultured Cancer Cells Reveal Molecular Differences of Cancer Cells in Patient Samples // Clin. Chem. 2007. V.53. P.1153-1155.
796.Shangguan D., Li Y., Tang Z., Cao Z.C., Chen H.W., Mallikaratchy P., Sefah K., Yang C.J., Tan W. Aptamers evolved from live cells as effective molecular probes for cancer study // Proc. Natl. Acad. Sci. USA. 2006. V.103. P.11838-11843.
797.Sheppard T.L., Ordoukhanian P., Joyce G.F. A DNA enzyme with N-glycosylase activity // Proc. Natl. Acad. Sci. USA. 2000. V.97. P.7802-7807.
142
798.Shi H., Fan X., Sevilimedu A., Lis J.T. RNA aptamers directed to discrete functional sites on a single protein structural domain // Proc. Natl. Acad. Sci. USA. 2007. V.104. P.3742-3746.
799.Shikamoto Y., Morita T., Fujimoto A., Mizuno H. Crystal structure of Mg2+ and Ca2+-bound Gla domain of factor IX complexed with binding protein // J. Biol. Chem. 2003. V.278. P.24090–24094.
800.Shimada T., Fujita N., Maeda M., Ishihama A. Systematic search for the Crabinding promoters using genomic SELEX system // Genes Cells. 2005. V.10. P.907918.
801.Shu D., Guo P. A viral RNA that binds ATP and contains a motif similar to an ATP-binding aptamer from SELEX // J. Biol. Chem. 2003. V.278. P.7119–7125.
802.Sidorov A.V., Grasby J.A., Williams D.M. Sequence-specific cleavage of RNA in the absence of divalent metal ions by a DNAzyme incorporating imidazolyl and amino functionalities // Nucleic Acids Res. 2004. V.32. P.1591-1601.
803.Sievers A., Beringer M., Rodnina M.V., Wolfenden R. The ribosome as an entropy trap // Proc. Natl. Acad. Sci. USA. 2004. V.101. P.7897-7901.
804.Silverman S.K. In vitro selection, characterization, and application of deoxyribozymes that cleave RNA // Nucleic Acids Res. 2005. V.33. P.6151-6163.
805.Silverman S.K. Rube Goldberg goes (ribo)nuclear? Molecular switches and sensors made from RNA // RNA. 2003. V.9. P.377-383.
806.Silverman S.K. Artificial functional nucleic acids: Aptamers, ribozymes, and deoxyribozymes identified by in vitro selection // Y. Lu and Y. Li, Eds. Functional Nucleic Acids for Sensing and Other Analytical Applications. Springer: New York, 2007. P.1-38.
807.Siolas D., Lerner C., Burchard J., Ge W., Linsley P.S., Paddison P.J., Hannon G.J., Cleary M.A. Synthetic shRNAs as potent RNAi triggers // Nat. Biotechnol. 2005. V.23. P.227–231.
808.Skehel J.J., Wiley D.C. Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin // Annu. Rev. Biochem. 2000. V.69. P.531–569.
143
809.Smith D., Kirschenheuter G.P., Charlton J., Guidot D.M., Repine J.E. In vitro selection of RNA-based irreversible inhibitors of human neutrophil elastase // Chem. Biol. 1995. V.2. P.741-750.
810.Soller M., White K. ELAV // Curr. Biol. 2004. V.14. P.R53.
811.Sooter L.J., Riedel T., Davidson E.A., Levy M., Cox J.C., Ellington A.D. Toward automated nucleic acid enzyme selection // Biol. Chem. 2001. V.382. P.1327-1334.
812.Soukup G.A., Breaker R.R. Design of allosteric hammerhead ribozymes activated by ligand-induced structure stabilization // Struct. Fold. Des. 1999. V.7. P.783–791.
813.6. Soukup G.A., Breaker R.R. Engineering precision RNA molecular switches // Proc. Natl. Acad. Sci. 1999. V.96. P.3584–3589.
814.7. Soukup G.A., Breaker R.R. Nucleic acid molecular switches // Trends Biotechnol. 1999. V.17. P.469–476.
815.8. Soukup G.A., Breaker R.R. Allosteric nucleic acid catalysts // Curr. Opin. Struct. Biol. 2000. V.10. P.318–325.
816.Soukup G.A., Breaker R.R. Allosteric ribozymes // KruppG. and GaurR.K., Eds. Ribozyme Biochemistry and Biotechnology. Eaton Publishing, Natick, MA, 2000. P.149–170.
817.Soukup G.A., DeRose E.C., Koizumi M., Breaker R.R. Generating new ligandbinding RNAs by affinity maturation and disintegration of allosteric ribozymes // RNA. 2001. V.7. P.524-536.
818.Soukup G.A., Ellington A.D., Maher L.J. 3rd. Selection of RNAs that bind to duplex DNA at neutral pH // J. Mol. Biol. 1996. V.259. P.216-228.
819.Soukup G.A., Emilsson G.A.M., Breaker R.R. Altering molecular recognition of RNA aptamers by allosteric selection // J. Mol. Biol. 2000. V.298. P.623–632.
820.Sreedhara A., Li Y., Breaker R.R. Ligating DNA with DNA // J. Am. Chem. Soc. 2004. V.126. P.3454-3460.
821.Srinivasan J., Cload S.T., Hamaguchi N., Kurz J., Keene S., Kurz M., Boomer R.M., Blanchard J., Epstein D., Wilson C., Diener J.L. ADP-specific sensors enable universal assay of protein kinase activity // Chem. Biol. 2004. V.11. P.499-508.
822.Srisawat C., Engelke D.R. Streptavidin aptamers: affinity tags for the study of RNAs and ribonucleoproteins // RNA. 2001. V.7. P.632-641.
144
823.Srisawat C., Goldstein I.J., Engelke D.R. Sephadex-binding RNA ligands: rapid affinity purification of RNA from complex RNA mixtures // Nucleic Acids Res. 2001. V.29. P.e4.
824.Stage T.K., Hertel K.J., Uhlenbeck O.C. // RNA. 1995. V.1. P.95.
825.Stanlis K.K.H., McIntosh R. Single-strand DNA Aptamers as Probes for Protein Localization in Cells // Journal of Histochemistry and Cytochemistry. 2003. V. 51. P.797-808.
826.Stelzl U., Worm U., Lalowski M., Haenig C., Brembeck F.H., Goehler H., Stroedicke M., Zenkner M., Schoenherr A., Koeppen S., et al. A human protein–
protein interaction network: A resource for annotating the proteome // Cell. 2005.
V.122. P.957–968.
827.Stojanovic M.N., de Prada P., Landry D.W. Aptamer-based folding fluorescent sensor for cocaine // J. Am. Chem. Soc. 2001. V.123. P.4928–4931.
828.Stojanovic M.N., Kolpashchikov D.M. Modular aptameric sensors // J. Am. Chem. Soc. 2004. V.126. P.9266–9270.
829.Stojanovic M.N., Landry D.W. Aptamer-based colorimetric probe for cocaine // J. Am. Chem. Soc. 2002. V.124. P.9678-9679.
830.Stoltenburg R., Reinemann C., Strehlitz B. FluMag-SELEX as an advantageous method for DNA aptamer selection // Anal. Bioanal. Chem. 2005. V.383. P.83-91.
831.Stormo G.D., Ji Y. Do mRNAs act as direct sensors of small molecules to control their expression? // PNAS. 2001. V.98. P.9465-9467.
832.5. Storz G. An expanding universe of noncoding RNAs // Science. 2002. V.296. P.1260–1263.
833.Striggles J.C., Martin M.B., Schmidt F.J. Frequency of RNA-RNA interaction in a model of the RNA World // RNA. 2006. V.12. P.353-359.
834.Sudarsan N., Barrick J.E., Breaker R.R. Metabolite-binding RNA domains are present in the genes of eukaryotes // RNA. 2003. V.9. P.644–647.
835.Sudarsan N., Hammond M.C., Block K.F., Welz R., Barrick J.E., Roth A., Breaker R.R. Tandem Riboswitch Architectures Exhibit Complex Gene Control Functions // Science. 2006. V.314. P.300-304.
145