836.Sudarsan N., Wickiser J.K., Nakamura S., Ebert M.S., Breaker R.R. An mRNA structure in bacteria that controls gene expression by binding lysine // Genes Dev. 2003. V.17. P.2688–2697.
837.Suess B., Fink B., Berens C., Stentz R., Hillen W. A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo // Nucleic Acids Research. 2004. V.32. P.1610-1614.
838.Suess B., Hanson S., Berens C., Fink B., Schroeder R., Hillen W. Conditional gene expression by controlling translation with tetracycline-binding aptamers // Nucleic Acids Res. 2003. V.31. P.1853–1858.
839.Suga H., Cowan J.A., Szostak J.W. Unusual metal ion catalysis in an acyltransferase ribozyme // Biochemistry. 1998. V.37. P.10118-10125.
840.Suga H., Lohse P.A., Szostak J.W. Structural and kinetic characterization of an acyl transferase ribozyme // J. Am. Chem. Soc. 1998. V.120. P.1151-1156.
841.Sullenger B.A., Gilboa E. Emerging clinical applications of RNA // Nature. 2002. V.418. P.252–258.
842.Sussman D., Nix J.C., Wilson C. The structural basis for molecular recognition by the vitamin B12 RNA aptamer // Nat. Struct. Biol. 2000. V.7. P.53-57.
843.Sussman D., Wilson C. A water channel in the core of the vitamin B12 RNA aptamer // Structure. 2000. V.8. P.719-727.
844.Szwajkajzer D., Carey J. Molecular and biological constraints on ligand-binding affinity and specificity // Biopolymers. 1997. V.44. P.181–198.
845.Tahiri-Alaoui A., Frigotto L., Manville N., Ibrahim J., Romby P., James W. High affinity nucleic acid aptamers for streptavidin incorporated into bi-specific capture ligands // Nucleic Acids Res. 2002. V.30. P.e45.
846.Takemura K., Wang P., Vorberg I., Surewicz W., Priola S.A., Kanthasamy A., Pottathil R., Chen S.G., Sreevatsan S.. DNA Aptamers That Bind to PrPC and Not PrPSc Show Sequence and Structure Specificity // Experimental Biology and Medicine. 2006. V.231. P.204-214.
847.Tanabe T., Kuwabara T., Warashina M., Tani K., Taira K., Asano S. Oncogene inactivation in a mouse model // Nature. 2000. V.406. P.473–474.
146
848.Tanabe T., Takata I., Kuwabara T., Warashina M., Kawasaki H., Tani K., Ohta S., Asano S., Taira K. Maxizymes, novel allosterically controllable ribozymes, can be designed to cleave various substrates // Biomacromolecules. 2000. V.1. P.108–117.
849.Tang J., Breaker R.R. Examination of the catalytic fitness of the hammerhead ribozyme by in vitro selection // RNA. 1997. V.3. P.914–925.
850.Tang J., Breaker R.R. Rational design of allosteric ribozymes // Chem. Biol. 1997. V.4. P.453–459.
851.Tang J., Breaker R.R. Mechanism for allosteric inhibition of an ATP-sensitive ribozyme // Nucleic Acids Res. 1998. V.26. P.4214–4221.
852.Tang J., Breaker R.R. Structural diversity of self-cleaving ribozymes // Proc. Natl Acad. Sci. USA. 2000. V.97. P.5784–5789.
853.Tang J., Xie J., Shao N., Yan Y. The DNA aptamers that specifically recognize ricin toxin are selected by two in vitro selection methods // Electrophoresis. 2006. V.27. P.1303-1311.
854.Tao J., Frankel A.D. Arginine-binding RNAs resembling TAR identified by in vitro selection // Biochemistry. 1996. V.35. P.2229-2238.
855.Tao J., Frankel A.D. // Proc. Natl. Acad. Sci. USA. 1992. V.89. P.2723.
856.Tarasow T.M., Kellogg E., Holley B.L., Nieuwlandt D., Tarasow S.L., Eaton B.E. The effect of mutation on RNA Diels-Alderases // J. Am. Chem. Soc. 2004. V.126. P.11843-11851.
857.Tarasow T.M., Tarasow S.L., Eaton B.E. RNA-catalysed carbon-carbon bond formation // Nature. 1997. V.389. P.54-57.
858.Tavitian B. In vivo imaging with oligonucleotides for diagnosis and drug development // Gut. 2003. V.52. P.iv40–iv47.
859.Tawfik D.S., Griffiths A.D. Man-made cell-like compartments for molecular evolution // Nat. Biotechnol. 1998. V.16. P.652-656.
860.Taylor S., Stojanovic M.N. Is There a Future for DNA-Based Molecular Devices in Diabetes Management? // Journal of Diabetes Science and Technology. 2007. V.1. P.440-444.
861.Teramoto N., Ichinari H., Kawazoe N., Imanishi Y., Ito Y. Peroxidase activity of in vitro-selected 2'-amino RNAs // Biotechnol. Bioeng. 2001. V.75. P.463-468.
147
862.Teramoto N., Imanishi Y., Ito Y. In vitro selection of a ligase ribozyme carrying alkylamino groups in the side chains // Bioconjug. Chem. 2000. V.11. P.744-748.
863.Teramoto N., Imanishi Y., Ito Y. In Vitro Selection of Ligase Ribozymes Containing 2'-Amino Groups // Journal of Bioactive and Compatible Polymers. 2000. V.15. P.297-308.
864.Tereshko V., Skripkin E., Patel D.J. Encapsulating Streptomycin within a small 40-mer RNA // Chem. Biol. 2003. V.10. P.175–187.
865.Theis M.G., Knorre A., Kellersch B., Moelleken J., Wieland F., Kolanus W., Famulok M. Discriminatory aptamer reveals serum response element transcription regulated by cytohesin-2 // Proc. Natl. Acad. Sci. USA. 2004. V.101. P.11221-11226.
866.Thompson K.M., Syrett H.A., Knudsen S.M., Ellington A.D. Group I aptazymes as genetic regulatory switches // BMC Biotechnol. 2002. V.2. P.21.
867.Thore S., Leibundgut M., Ban N. Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand // Science. 2006. V.312. P.1208–
1211.
868.Thum O., Jager S., Famulok M. Functionalized DNA: A New Replicable Biopolymer // Angew. Chem. Int. Ed. 2001. V.40. P.3990-3993.
869.Tjandra N., Bax A. Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium // Science. 1997. V.278. P.1111–1114.
870.Tian Y., Adya N., Wagner S., Giam C.Z., Green M.R., Ellington A.D. Dissecting protein:protein interactions between transcription factors with an RNA aptamer // RNA. 1995. V.1. P.317-326.
871.Tok J.B., Cho J., Rando R.R. RNA aptamers that specifically bind to a 16S ribosomal RNA decoding region construct // Nucleic Acids Res. 2000. V.28. P.29022910.
872.Tombelli S., Minunni M., Mascini M. Analytical applications of aptamers // Biosensors & Bioelectronics. 2005. V.20. P.2424–2434.
873.Tomsic J., McDaniel B.A., Grundy F.J., Henkin T.M. Natural Variability in S- Adenosylmethionine (SAM)-Dependent Riboswitches: S-Box Elements in Bacillus subtilis Exhibit Differential Sensitivity to SAM In Vivo and In Vitro // Journal of Bacteriology. 2008. V.190. P. 823–833.
148
874.Tor Y., Hermann T., Westhof E. // Chem. Biol. 1998. V.5. P.R277.
875.Toulme J.J., Di Primo C., Boucard D. Regulating eukaryotic gene expression with aptamers // FEBS Lett. 2004. V.567. P.55-62.
876.Travascio P., Bennet A.J., Wang D.Y., Sen D. A ribozyme and a catalytic DNA with peroxidase activity: active sites versus cofactor-binding sites // Chem. Biol. 1999. V.6. P.779-787.
877.Treiber D.K., Rook M.S., Zarrinkar P.P., Williamson J.R. Kinetic intermediates trapped by native interactions in RNA folding // Science. 1998. V.279. P.1943–1946.
878.Tsai D.E., Kenan D.J., Keene J.D. In vitro selection of an RNA epitope immunologically cross-reactive with a peptide // Proc. Natl. Acad. Sci. USA. 1992. V.89. P.8864-8868.
879.Tsang J., Joyce G.F. In vitro evolution of randomized ribozymes // Methods Enzymol. 1996. V.267. P.410-426.
880.Tsang J., Joyce G.F. Specialization of the DNA-cleaving activity of a group I ribozyme through in vitro evolution // J. Mol. Biol. 1996. V.262. P.31-42.
881.Tsukiji S., Pattnaik S.B., Suga H. An alcohol dehydrogenase ribozyme // Nat. Struct. Biol. 2003. V.10. P.713-717.
882.Tsukiji S., Pattnaik S.B., Suga H. Reduction of an aldehyde by a NADH/Zn2+- dependent redox active ribozyme // J. Am. Chem. Soc. 2004. V.126. P.5044-5045.
883.Tucker C.E., Chen L.S., Judkins M.B., Farmer J.A., Gill S.C., Drolet D.W. Detection and plasma pharmacokinetics of an anti-vascular endothelial growth factor oligonucleotide-aptamer (NX1838) in rhesus monkeys // J. Chromatogr. B. 1999. V.732. P.203-212.
884.Tuerk C., MacDougal S., Gold L. RNA pseudoknots that inhibit human immunodeficiency virus type 1 reverse transcriptase // Proc. Natl. Acad. Sci. USA. 1992. V.89. P.6988-6992.
885.Tuschl T., Eckstein F. Hammerhead ribozymes: importance of stem–loop II for activity // Proc. Natl Acad. Sci. USA. 1993. V.90. P.6991–6994.
886.Tuschl T., Sharp P.A., Bartel D.P. Selection in vitro of novel ribozymes from a partially randomized U2 and U6 snRNA library // EMBO J. 1998. V.17. P.2637-2650.
887.Uhlenbeck O.C. // Nature Struct. Biol. 1998. V.5. P.174.
149
888.Uhlenbeck O.C. Less isn't always more // RNA. 2003. V.9. P.1415-1417.
889.Ule J., Jensen K., Mele A., Darnell R.B. CLIP: A method for identifying protein–
RNA interaction sites in living cells // Methods. 2005. V.37. P.376–386.
890.Ulrich H. RNA aptamers: From basic science toward therapy // Handb. Exp. Pharmacol. 2006. V.173. P.305–326.
891.Ulrich H., Magdesian M.H., Alves M.J., Colli W. In vitro selection of RNA aptamers that bind to cell adhesion receptors of Trypanosoma cruzi and inhibit cell invasion // J. Biol. Chem. 2002. V.277. P.20756-20762.
892.Umezawa Y., Shimada T., Kori A., Yamada K., Ishihama A. The Uncharacterized Transcription Factor YdhM Is the Regulator of the nemA Gene, Encoding N- Ethylmaleimide Reductase // J. Bacteriol. 2008. V.190. P.5890-5897.
893.Unrau P.J., Bartel D.P. RNA-catalysed nucleotide synthesis // Nature. 1998. V.395. P.260-263.
894.Unrau P.J., Bartel D.P. An oxocarbenium-ion intermediate of a ribozyme reaction indicated by kinetic isotope effects // Proc. Natl. Acad. Sci. USA. 2003. V.100. P.15393-15397.
895.Vaidya A., Suga H. Diverse roles of metal ions in acyl-transferase ribozymes // Biochemistry. 2001. V.40. P.7200-7210.
896.Vaish N.K., Dong F., Andrews L., Schweppe R.E., Ahn N.G., Blatt L., Seiwert S.D. Monitoring post-translational modifications of proteins with allosteric ribozymes // Nat. Biotechnol. 2002. V.20. P.810–815.
897.Vaish N.K., Larralde R., Fraley A.W., Szostak J.W., McLaughlin L.W. A novel, modification-dependent ATP-binding aptamer selected from an RNA library incorporating a cationic functionality // Biochemistry. 2003. V.42. P.8842–8851.
898.Valegård K., Liljas L., Fridborg K., Unge T. // Nature. 1990. V.345. P.36.
899.Valegård K., et al. // J. Mol. Biol. 1997. V.270. P.724.
900.Valegård K., Murray J.B., Stockley P.G., Stonehouse N.J., Liljas L. // Nature. 1994. V.371. P.623.
901.Valencia-Sanchez M.A., Liu J., Hannon G.J., Parker R. Control of translation and mRNA degradation by miRNA and siRNAs // Genes Dev. 2006. V.20. P.515–524.
150