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DICOM PS3.17 2020a - Explanatory Information​

Page 351​

Attribute Name​

Tag​

Attribute Description​

Example Value​

Comments​

>Specimen Short​

(0040,0600)​Short textual specimen​

Part A: LEFT UPPER LOBE, Block​This Attribute​

Description​

 

description​

5: Mass (2 pc), Slide 1: H&E​

concatenates four LIS​

 

 

 

 

fields: 1. Specimen​

Received, 2. Cassette​ Summary, 3. Number​ of Pieces in Block, 4.​ Staining. This does not​ alwaysworkthisnicely.​ Often one or more of​ fields is empty or​ confusing.​

Note​

This field is​ limited to 64​ characters​

>Specimen Detailed​ (0040,0602)​Detailed textual specimen​ Description​ description​

A: Received fresh for intraoperative​This is a mapping from​ consultation,labeledwiththepatient's​the LIS Gross​

name, number and "left upper lobe,"​Description Field and​ isapink-tan,wedge-shapedsegment​the Block Summary.​ of soft tissue, 6.9 x 4.2 x 1.0 cm. The​Note that in Case​

pleural surface is pink-tan and​

S07-100,thereweresix​

glistening with a stapled line​

parts. This means the​

measuring 12.0 cm. in length. The​ LIS gross description​ pleural surface shows a 0.5 cm. area​field will have six​

of puckering. The pleural surface is​sections (A - F). We​ inked black. The cut surface reveals​would have to parse​ a 1.2 x 1.1 cm, white-gray, irregular​the gross description​ massabuttingthepleuralsurfaceand​field into those parts​

deep to the puckered area. The​

(A-F) and then only​

remainder of the cut surface is​

incorporate section "A"​

red-brown and congested. No other​into this Attribute. The​ lesionsareidentified.Representative​same would be true of​

sections are submitted.​

the Blocks.​

Block 5: "Mass" (2 pieces)​

Note​

 

One could​

 

consider​

 

listing all the​

 

Blocks​

 

associated​

 

with Part A. It​

 

wouldbeeasy​

 

to do and​

 

might give​

 

useful​

 

information.​

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Page 352​

 

DICOM PS3.17 2020a - Explanatory Information​

Attribute Name​

Tag​

Attribute Description​

Example Value​

>Specimen​

(0040,0610)​Sequence of Items identifying​ (see Table NN.6-4)​

Preparation​

 

the process steps used to​

 

Sequence​

 

preparethespecimenforimage​

 

 

 

acquisition. One or more Items​

 

 

 

maybepresent.ThisSequence​

 

 

 

includes description of the​

 

 

 

specimen sampling step from a​

 

 

 

parent specimen, potentially​

 

 

 

back to the original part​

 

 

 

collection.​

 

>>Specimen​

(0040,0612)​Sequence of Content Items​

 

Preparation Step​

 

identifying the processes used​

 

Content Item​

 

in one preparation step to​

 

Sequence​

 

preparethespecimenforimage​

 

 

 

acquisition. One or more Items​

 

 

 

may be present.​

 

>Primary Anatomic​ (0008,2228)​Original anatomic location in​ Structure Sequence​ patient of specimen. This​

location may be inherited from​ the parent specimen, or further​ refined by modifiers depending​ on the sampling procedure for​ this specimen.​

>>Code Value​

(0008,0100)​

44714003​

>>Coding Scheme​

(0008,0102)​

SCT​

Designator​

 

 

>>Code Meaning​

(0008,0104)​

Left Upper Lobe of Lung​

Comments​

This is a code​ sequence item​

The example Specimen Preparation Sequence first describes the most recent processing of the slide (staining), then goes back to​ show its provenance. Notice that there is no sampling process for the slide described here; the LIS did not record the step of slicing​ of blocks into slides.​

 

 

Table NN.6-4. Specimen Preparation Sequence for Slide​

Specimen​Specimen​Template / Row​Value Type​Concept Name Code Sequence​ Example Value​ Comments​

Preparation​Prep.Step​

(0040,A040)​

(0040,A043)​

Sequence -​Content​

 

 

Item #​

Item​

 

 

 

Sequence​

 

 

 

- Item #​

 

 

1​

1​

8001 / 1​

TEXT​

(121041, DCM, "Specimen​

S07-100 A​

 

 

 

 

Identifier")​

 

 

2​

8001 / 2​

TEXT​

(111724, DCM, "Issuer of​

Case Medical Center​

 

 

 

 

Specimen Identifier")​

 

Part​

Collection​

in OR.​

3​

8001 / 3​

CODE​

(111701,DCM,"Processingtype")​(17636008, SCT,​

 

 

 

 

"Specimen collection")​

4​

8001 / 4​

DATETIME​

(111702, DCM, "DateTime of​

200703230827​

 

 

 

processing")​

 

5​

8001 / 5​

TEXT​

(111703, DCM, "Processing step​Taken​

 

 

 

description")​

 

6​

8001 / 8​

CODE​

(111704, DCM, "Sampling​

(65801008, SCT,​

 

8002 / 1​

 

Method")​

"Excision")​

 

 

 

 

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DICOM PS3.17 2020a - Explanatory Information​

Page 353​

Specimen​Specimen​Template / Row​Value Type​Concept Name Code Sequence​

Example Value​ Comments​

Preparation​Prep.Step​

(0040,A040)​

(0040,A043)​

 

Sequence -​Content​

 

 

 

Item #​

Item​

 

 

 

 

Sequence​

 

 

 

 

- Item #​

 

 

 

2​

1​

8001 / 1​

TEXT​

(121041, DCM, "Specimen​

S07-100 A​

 

 

 

 

Identifier")​

 

 

2​

8001 / 2​

TEXT​

(111724, DCM, "Issuer of​

Case Medical Center​

 

 

 

 

Specimen Identifier")​

 

 

3​

8001 / 3​

CODE​

(111701,DCM,"Processingtype")​(428995007, SCT,​

 

 

 

 

 

"Specimen Receiving")​

 

4​

8001 / 4​

DATETIME​

(111702, DCM, "DateTime of​

200703230943​

 

 

 

 

processing")​

 

3​

1​

8001 / 1​

TEXT​

(121041, DCM, "Specimen​

S07-100 A 5​

 

 

 

 

Identifier")​

 

 

2​

8001 / 2​

TEXT​

(111724, DCM, "Issuer of​

Case Medical Center​

 

 

 

 

Specimen Identifier")​

 

 

3​

8001 / 3​

CODE​

(111701,DCM,"Processingtype")​(433465004, SCT,​

 

 

 

 

 

"Sampling of tissue​

 

 

 

 

 

specimen")​

Specimen​ received in​ Pathology​ department​

Samplingto​ block​

 

4​

8001 / 5​

TEXT​

(111703, DCM, "Processing step​Block Creation​

 

 

 

 

 

description")​

 

 

 

5​

8001 / 8​

CODE​

(111704, DCM, "Sampling​

(122459003, SCT,​

 

 

 

8002 / 1​

 

Method")​

"Dissection")​

 

 

 

 

 

 

 

 

6​

8001 / 8​

TEXT​

(111705,DCM,"ParentSpecimen​S07-100 A​

 

 

 

8002 / 2​

 

Identifier")​

 

 

 

 

 

 

 

 

 

7​

8001 / 8​

TEXT​

(111706, DCM, "Issuer of Parent​Case Medical Center​

 

 

 

8002 / 3​

 

Specimen Identifier")​

 

 

 

 

 

 

 

 

 

8​

8001 / 8​

CODE​

(111707, DCM, "Parent specimen​(38866009, SCT,​

 

 

 

8002 / 4​

 

type")​

"Anatomic part")​

 

 

 

 

 

 

 

 

9​

8001 / 8​

TEXT​

(111709, DCM, "Location of​

Mass​

This is​

 

 

8002 / 6​

 

sampling site")​

 

coming​

 

 

 

 

 

from the​

 

 

 

 

 

 

summaryof​

 

 

 

 

 

 

blocks field​

 

 

 

 

 

 

in the LIS​

4​

1​

8001 / 1​

TEXT​

(121041, DCM, "Specimen​

S07-100 A 5​

Block​

 

 

 

 

Identifier")​

 

Processing​

 

2​

8001 / 2​

TEXT​

(111724, DCM, "Issuer of​

Case Medical Center​

 

 

 

 

 

Specimen Identifier")​

 

 

 

3​

8001 / 3​

CODE​

(111701,DCM,"Processingtype")​(9265001, SCT,​

 

 

 

 

 

 

"Specimen Processing")​

 

4​

8001 / 4​

DATETIME​

(111702, DCM, "DateTime of​

200703231900​

 

 

 

 

 

processing")​

 

 

 

5​

8001 / 5​

TEXT​

(111703, DCM, "Processing step​Standard Block​

 

 

 

 

 

description")​

Processing (Formalin)​

 

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Page 354​

 

 

DICOM PS3.17 2020a - Explanatory Information​

 

 

Specimen​Specimen​Template / Row​Value Type​Concept Name Code Sequence​ Example Value​

Comments​

Preparation​Prep.Step​

(0040,A040)​

(0040,A043)​

 

 

Sequence -​Content​

 

 

 

 

 

Item #​

Item​

 

 

 

 

 

 

 

Sequence​

 

 

 

 

 

 

- Item #​

 

 

 

 

 

 

 

6​

8001 / 10​

CODE​

(430864009, SCT, "Tissue​

(111095003, SCT,​

 

 

 

 

 

Fixative")​

"Formalin")​

 

5​

1​

8001 / 1​

TEXT​

(121041, DCM, "Specimen​

S07-100 A 5​

Block​

 

 

 

 

Identifier")​

 

embedding​

 

2​

8001 / 2​

TEXT​

(111724, DCM, "Issuer of​

Case Medical Center​

 

 

 

 

 

Specimen Identifier")​

 

 

 

3​

8001 / 3​

CODE​

(111701,DCM,"Processingtype")​(9265001, SCT,​

 

 

 

 

 

 

 

"Specimen Processing")​

 

4​

8001 / 4​

DATETIME​

(111702, DCM, "DateTime of​

200703240500​

 

 

 

 

 

processing")​

 

 

 

5​

8001 / 5​

TEXT​

(111703, DCM, "Processing step​Embedding (paraffin)​

 

 

 

 

 

description")​

 

 

 

6​

8001 / 11​

CODE​

(430863003, SCT, "Embedding​ (255667006, SCT,​

 

 

 

 

 

medium")​

"Paraffin")​

 

6​

1​

8001 / 1​

TEXT​

(121041, DCM, "Specimen​

S07-100 A 5 1​

Slide​

 

 

 

 

Identifier")​

 

Staining​

 

2​

8001 / 3​

CODE​

(111701,DCM,"Processingtype")​(127790008, SCT,​

 

 

 

 

 

 

 

"Staining")​

 

 

3​

8001 / 4​

DATETIME​

(111702, DCM, "DateTime of​

200703240700​

 

 

 

 

 

processing")​

 

 

 

4​

8001 / 9​

TEXT​

(424361007, SCT, "Using​

H&E (1)​

 

 

 

8003 / 2​

 

substance")​

 

 

 

 

 

 

 

 

 

NN.7 Specimen Data in Pathology Imaging Workflow Management​

Workflow management in the DICOM imaging environment utilizes the Modality Worklist (MWL) and Modality Performed Procedure​ Step(MPPS)services.Withinthepathologydepartment,theseservicessupportbothhumancontrolledimaging(e.g.,grossspecimen​ photography), as well as automated slide scanning modalities.​

While this section provides an overview of the DICOM services for managing workflow, the reader is referred to the IHE Anatomic​ Pathology Domain Technical Framework for specific use cases and profiles for pathology imaging workflow management.​

NN.7.1 Modality Worklist​

The contents of the Specimen Module may be conveyed in the Scheduled Specimen Sequence of the Modality Worklist query. This​ feature allows an imaging system (Modality Worklist SCU) to query for work items by Container ID. The worklist server (SCP) of the​ laboratory information system can then return all the necessary information for creating a DICOM specimen-related image. This in-​ formation includes patient identity and the complete slide processing history (including stain applied). It may be used for imaging set-​ up and/or inclusion in the Image SOP Instance.​

NN.7.1.1 MWL for Whole Slide Imaging​

In addition to the Specimen Module Attributes, the set up of an automated whole slide scanner requires the acquisition parameters​ such as scan resolution, number of Z-planes, fluorescence wavelengths, etc. A managed set of such parameters is called a Protocol​ (see PS3.3), and the MWL response may contain a Protocol Code to control scanning set up. Additional set-up parameters can be​ passedasContentItemsintheassociatedProtocolContextSequence;thismightbeimportantwhenthereadingpathologistrequests​ a rescan of the slide with slightly different settings.​

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DICOM PS3.17 2020a - Explanatory Information​

Page 355​

NN.7.2 Modality Performed Procedure Step​

When scanning is initiated, the scanner reports the procedure step in a Modality Performed Procedure Step (MPPS) transaction.​

Upon completion (or cancellation) of an image acquisition, the modality reports the work completed in an update to the MPPS. The​ MPPScanconveyboththeContainerIDandtheimageUIDs,sothattheworkflowmanager(laboratoryinformationsystem)isadvised​ of the image UIDs associated with each imaged specimen.​

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Источник: https://studfile.net/preview/14585770/